J3_3JCS_011
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AC*GAUAAGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 3JCS|1|7|A|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3JCS_011 not in the Motif Atlas
- Homologous match to J3_8P4V_024
- Geometric discrepancy: 0.1339
- The information below is about J3_8P4V_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
3JCS|1|7|A|44
3JCS|1|7|C|45
*
3JCS|1|7|G|58
3JCS|1|7|A|59
3JCS|1|7|U|60
3JCS|1|7|A|61
3JCS|1|7|A|62
3JCS|1|7|G|63
3JCS|1|7|U|64
*
3JCS|1|7|A|95
3JCS|1|7|A|96
3JCS|1|7|U|97
3JCS|1|7|C|98
3JCS|1|7|U|99
Current chains
- Chain 7
- 5.8S ribosomal RNA
Nearby chains
- Chain V
- ribosomal protein L23
- Chain a
- ribosomal protein L29
- Chain j
- ribosomal protein L37e
- Chain l
- ribosomal protein L39e
Coloring options: