J3_3PIO_010

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

3PIO|1|X|A|2497, 3PIO|1|X|U|2498

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3PIO_010 not in the Motif Atlas

Homologous match to J3_7A0S_011

Geometric discrepancy: 0.106

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

3PIO|1|X|C|2496
3PIO|1|X|A|2497
3PIO|1|X|U|2498
3PIO|1|X|C|2499
*
3PIO|1|X|G|2524
3PIO|1|X|U|2525
3PIO|1|X|U|2526
*
3PIO|1|X|A|2540
3PIO|1|X|U|2541
3PIO|1|X|U|2542
3PIO|1|X|A|2543
3PIO|1|X|A|2544
3PIO|1|X|A|2545
3PIO|1|X|G|2546

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain G

50S ribosomal protein L13

Chain H

50S ribosomal protein L14