J3_3PIO_029
3D structure
- PDB id
- 3PIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- CUC*GAG*UAGAAG
- Length
- 12 nucleotides
- Bulged bases
- 3PIO|1|X|G|2313, 3PIO|1|X|A|2315
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3PIO_029 not in the Motif Atlas
- Homologous match to J3_7A0S_010
- Geometric discrepancy: 0.226
- The information below is about J3_7A0S_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.2
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
3PIO|1|X|C|2274
3PIO|1|X|U|2275
3PIO|1|X|C|2276
*
3PIO|1|X|G|2300
3PIO|1|X|A|2301
3PIO|1|X|G|2302
*
3PIO|1|X|U|2311
3PIO|1|X|A|2312
3PIO|1|X|G|2313
3PIO|1|X|A|2314
3PIO|1|X|A|2315
3PIO|1|X|G|2316
Current chains
- Chain X
- RIBOSOMAL 23S RNA
Nearby chains
- Chain D
- 50S ribosomal protein L5
- Chain L
- 50S ribosomal protein L18
- Chain T
- 50S ribosomal protein L27
- Chain Y
- 5S ribosomal RNA; 5S rRNA
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