3D structure

PDB id
3U5H (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 60S subunit, ribosome B
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UGAACUA*UAG*CGAA
Length
14 nucleotides
Bulged bases
3U5H|1|5|A|817, 3U5H|1|5|G|924
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3U5H_002 not in the Motif Atlas
Geometric match to J3_8P9A_049
Geometric discrepancy: 0.0504
The information below is about J3_8P9A_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64189.2
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

3U5H|1|5|U|814
3U5H|1|5|G|815
3U5H|1|5|A|816
3U5H|1|5|A|817
3U5H|1|5|C|818
3U5H|1|5|U|819
3U5H|1|5|A|820
*
3U5H|1|5|U|905
3U5H|1|5|A|906
3U5H|1|5|G|907
*
3U5H|1|5|C|923
3U5H|1|5|G|924
3U5H|1|5|A|925
3U5H|1|5|A|926

Current chains

Chain 5
25S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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