J3_3U5H_002

3D structure

PDB id

3U5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 60S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

3U5H|1|5|A|817, 3U5H|1|5|G|924

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3U5H_002 not in the Motif Atlas

Geometric match to J3_8P9A_049

Geometric discrepancy: 0.0504

The information below is about J3_8P9A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

3U5H|1|5|U|814
3U5H|1|5|G|815
3U5H|1|5|A|816
3U5H|1|5|A|817
3U5H|1|5|C|818
3U5H|1|5|U|819
3U5H|1|5|A|820
*
3U5H|1|5|U|905
3U5H|1|5|A|906
3U5H|1|5|G|907
*
3U5H|1|5|C|923
3U5H|1|5|G|924
3U5H|1|5|A|925
3U5H|1|5|A|926

Current chains

Chain 5

25S rRNA

Nearby chains