J3_3U5H_002
3D structure
- PDB id
- 3U5H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 60S subunit, ribosome B
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 3U5H|1|5|A|817, 3U5H|1|5|G|924
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3U5H_002 not in the Motif Atlas
- Geometric match to J3_8P9A_049
- Geometric discrepancy: 0.0504
- The information below is about J3_8P9A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64189.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
3U5H|1|5|U|814
3U5H|1|5|G|815
3U5H|1|5|A|816
3U5H|1|5|A|817
3U5H|1|5|C|818
3U5H|1|5|U|819
3U5H|1|5|A|820
*
3U5H|1|5|U|905
3U5H|1|5|A|906
3U5H|1|5|G|907
*
3U5H|1|5|C|923
3U5H|1|5|G|924
3U5H|1|5|A|925
3U5H|1|5|A|926
Current chains
- Chain 5
- 25S rRNA
Nearby chains
No other chains within 10ÅColoring options: