J3_3U5H_005

3D structure

PDB id

3U5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 60S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

3U5H|1|5|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3U5H_005 not in the Motif Atlas

Geometric match to J3_8P9A_053

Geometric discrepancy: 0.0721

The information below is about J3_8P9A_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05025.1

Basepair signature

cWW-tSH-tWW-tHW-cWW-F-cWW-F

Number of instances in this motif group

4

Unit IDs

3U5H|1|5|U|1479
3U5H|1|5|G|1480
3U5H|1|5|A|1481
3U5H|1|5|A|1482
3U5H|1|5|G|1483
3U5H|1|5|U|1484
3U5H|1|5|G|1485
*
3U5H|1|5|C|1857
3U5H|1|5|A|1858
3U5H|1|5|A|1859
*
3U5H|1|5|U|1871
3U5H|1|5|C|1872
3U5H|1|5|U|1873
3U5H|1|5|A|1874

Current chains

Chain 5

25S rRNA

Nearby chains