J3_3U5H_008

3D structure

PDB id

3U5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 60S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGCU*ACGUUCUAGCAUUCAAG*UGAU

Length

25 nucleotides

Bulged bases

3U5H|1|5|G|2549, 3U5H|1|5|U|2550, 3U5H|1|5|U|2551, 3U5H|1|5|A|2554, 3U5H|1|5|U|2558, 3U5H|1|5|U|2559, 3U5H|1|5|C|2560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3U5H_008 not in the Motif Atlas

Geometric match to J3_8P9A_060

Geometric discrepancy: 0.1407

The information below is about J3_8P9A_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28639.1

Basepair signature

cWW-tSS-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

3U5H|1|5|A|2529
3U5H|1|5|G|2530
3U5H|1|5|C|2531
3U5H|1|5|U|2532
*
3U5H|1|5|A|2547
3U5H|1|5|C|2548
3U5H|1|5|G|2549
3U5H|1|5|U|2550
3U5H|1|5|U|2551
3U5H|1|5|C|2552
3U5H|1|5|U|2553
3U5H|1|5|A|2554
3U5H|1|5|G|2555
3U5H|1|5|C|2556
3U5H|1|5|A|2557
3U5H|1|5|U|2558
3U5H|1|5|U|2559
3U5H|1|5|C|2560
3U5H|1|5|A|2561
3U5H|1|5|A|2562
3U5H|1|5|G|2563
*
3U5H|1|5|U|2578
3U5H|1|5|G|2579
3U5H|1|5|A|2580
3U5H|1|5|U|2581

Current chains

Chain 5

25S rRNA

Nearby chains