J3_4A1B_004
3D structure
- PDB id
- 4A1B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6. This file contains 26S rRNA and proteins of molecule 3.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 4A1B|1|1|A|842, 4A1B|1|1|G|949
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4A1B_004 not in the Motif Atlas
- Geometric match to J3_8P9A_049
- Geometric discrepancy: 0.0776
- The information below is about J3_8P9A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.1
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
4A1B|1|1|U|839
4A1B|1|1|G|840
4A1B|1|1|A|841
4A1B|1|1|A|842
4A1B|1|1|C|843
4A1B|1|1|U|844
4A1B|1|1|A|845
*
4A1B|1|1|U|930
4A1B|1|1|A|931
4A1B|1|1|G|932
*
4A1B|1|1|C|948
4A1B|1|1|G|949
4A1B|1|1|A|950
4A1B|1|1|A|951
Current chains
- Chain 1
- 26S RRNA
Nearby chains
- Chain A
- RIBOSOMAL PROTEIN L37
- Chain B
- RPL39
Coloring options: