J3_4A1B_006

3D structure

PDB id

4A1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6. This file contains 26S rRNA and proteins of molecule 3.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

4A1B|1|1|A|1508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4A1B_006 not in the Motif Atlas

Geometric match to J3_8P9A_053

Geometric discrepancy: 0.0878

The information below is about J3_8P9A_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

4A1B|1|1|C|1505
4A1B|1|1|G|1506
4A1B|1|1|A|1507
4A1B|1|1|A|1508
4A1B|1|1|G|1509
4A1B|1|1|U|1510
4A1B|1|1|G|1511
*
4A1B|1|1|C|1881
4A1B|1|1|A|1882
4A1B|1|1|A|1883
*
4A1B|1|1|U|1895
4A1B|1|1|C|1896
4A1B|1|1|U|1897
4A1B|1|1|G|1898

Current chains

Chain 1

26S RRNA

Nearby chains

Chain L

RPL34