J3_4A2I_014
3D structure
- PDB id
- 4A2I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron Microscopy Structure of the 30S Subunit in Complex with the YjeQ Biogenesis Factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 16.5 Å
Loop
- Sequence
- GCCUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 4A2I|1|A|C|48, 4A2I|1|A|A|51
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4A2I_014 not in the Motif Atlas
- Homologous match to J3_5J7L_050
- Geometric discrepancy: 0.1066
- The information below is about J3_5J7L_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4A2I|1|A|G|46
4A2I|1|A|C|47
4A2I|1|A|C|48
4A2I|1|A|U|49
4A2I|1|A|A|50
4A2I|1|A|A|51
4A2I|1|A|C|52
*
4A2I|1|A|G|359
4A2I|1|A|G|360
4A2I|1|A|G|361
4A2I|1|A|G|362
4A2I|1|A|A|363
4A2I|1|A|A|364
4A2I|1|A|U|365
4A2I|1|A|A|366
4A2I|1|A|U|367
*
4A2I|1|A|A|393
4A2I|1|A|G|394
4A2I|1|A|C|395
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain L
- 30S RIBOSOMAL PROTEIN S12
- Chain P
- 30S RIBOSOMAL PROTEIN S16
Coloring options: