J3_4ADV_009
3D structure
- PDB id
- 4ADV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E. coli methyltransferase KsgA bound to the E. coli 30S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.5 Å
Loop
- Sequence
- CAAUG*CGUAGUCC*GUCG
- Length
- 17 nucleotides
- Bulged bases
- 4ADV|1|A|U|1240
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4ADV_009 not in the Motif Atlas
- Homologous match to J3_5J7L_011
- Geometric discrepancy: 0.2958
- The information below is about J3_5J7L_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
4ADV|1|A|C|1237
4ADV|1|A|A|1238
4ADV|1|A|A|1239
4ADV|1|A|U|1240
4ADV|1|A|G|1241
*
4ADV|1|A|C|1296
4ADV|1|A|G|1297
4ADV|1|A|U|1298
4ADV|1|A|A|1299
4ADV|1|A|G|1300
4ADV|1|A|U|1301
4ADV|1|A|C|1302
4ADV|1|A|C|1303
*
4ADV|1|A|G|1334
4ADV|1|A|U|1335
4ADV|1|A|C|1336
4ADV|1|A|G|1337
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain G
- 30S RIBOSOMAL PROTEIN S7
- Chain M
- 30S RIBOSOMAL PROTEIN S13
Coloring options: