J3_4CSU_004

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CSU_004 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.5881

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

4CSU|1|B|G|1055
4CSU|1|B|G|1056
4CSU|1|B|A|1057
*
4CSU|1|B|U|1081
4CSU|1|B|U|1082
4CSU|1|B|U|1083
4CSU|1|B|A|1084
4CSU|1|B|A|1085
4CSU|1|B|A|1086
4CSU|1|B|G|1087
*
4CSU|1|B|C|1102
4CSU|1|B|A|1103
4CSU|1|B|C|1104

Current chains

Chain B

23S RRNA

Nearby chains

Chain I

50S RIBOSOMAL PROTEIN L11