J3_4CUV_002

3D structure

PDB id

4CUV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

4CUV|1|1|A|817, 4CUV|1|1|G|924, 4CUV|1|1|A|925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CUV_002 not in the Motif Atlas

Geometric match to J3_8P9A_049

Geometric discrepancy: 0.068

The information below is about J3_8P9A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.1

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

10

Unit IDs

4CUV|1|1|U|814
4CUV|1|1|G|815
4CUV|1|1|A|816
4CUV|1|1|A|817
4CUV|1|1|C|818
4CUV|1|1|U|819
4CUV|1|1|A|820
*
4CUV|1|1|U|905
4CUV|1|1|A|906
4CUV|1|1|G|907
*
4CUV|1|1|C|923
4CUV|1|1|G|924
4CUV|1|1|A|925
4CUV|1|1|A|926

Current chains

Chain 1

25S RRNA

Nearby chains