J3_4CUV_005

3D structure

PDB id

4CUV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

4CUV|1|1|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CUV_005 not in the Motif Atlas

Geometric match to J3_8P9A_053

Geometric discrepancy: 0.0841

The information below is about J3_8P9A_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05025.1

Basepair signature

cWW-tSH-tWW-tHW-cWW-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4CUV|1|1|U|1479
4CUV|1|1|G|1480
4CUV|1|1|A|1481
4CUV|1|1|A|1482
4CUV|1|1|G|1483
4CUV|1|1|U|1484
4CUV|1|1|G|1485
*
4CUV|1|1|C|1857
4CUV|1|1|A|1858
4CUV|1|1|A|1859
*
4CUV|1|1|U|1871
4CUV|1|1|C|1872
4CUV|1|1|U|1873
4CUV|1|1|A|1874

Current chains

Chain 1

25S RRNA

Nearby chains