J3_4CUV_014

3D structure

PDB id

4CUV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUGAAAAG*CG*CU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CUV_014 not in the Motif Atlas

Geometric match to J3_8CRE_005

Geometric discrepancy: 0.0902

The information below is about J3_8CRE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

4CUV|1|1|A|369
4CUV|1|1|U|370
4CUV|1|1|G|371
4CUV|1|1|A|372
4CUV|1|1|A|373
4CUV|1|1|A|374
4CUV|1|1|A|375
4CUV|1|1|G|376
*
4CUV|1|1|C|403
4CUV|1|1|G|404
*
4CUV|1|4|C|19
4CUV|1|4|U|20

Current chains

Chain 1

25S RRNA

Chain 4

5.8S RRNA

Nearby chains