J3_4CUX_003

3D structure

PDB id

4CUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUCA*UAACUACUG*CAUUU

Length

18 nucleotides

Bulged bases

4CUX|1|2|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CUX_003 not in the Motif Atlas

Geometric match to J3_8P9A_074

Geometric discrepancy: 0.1238

The information below is about J3_8P9A_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23895.1

Basepair signature

cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4CUX|1|2|A|881
4CUX|1|2|U|882
4CUX|1|2|C|883
4CUX|1|2|A|884
*
4CUX|1|2|U|928
4CUX|1|2|A|929
4CUX|1|2|A|930
4CUX|1|2|C|931
4CUX|1|2|U|932
4CUX|1|2|A|933
4CUX|1|2|C|934
4CUX|1|2|U|935
4CUX|1|2|G|936
*
4CUX|1|2|C|943
4CUX|1|2|A|944
4CUX|1|2|U|945
4CUX|1|2|U|946
4CUX|1|2|U|947

Current chains

Chain 2

18S RRNA

Nearby chains