J3_4CUX_005

3D structure

PDB id

4CUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUAAUUU*GGGGAAACUCAC*GGCCG

Length

25 nucleotides

Bulged bases

4CUX|1|2|G|1199, 4CUX|1|2|G|1201, 4CUX|1|2|A|1203, 4CUX|1|2|C|1457

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CUX_005 not in the Motif Atlas

Geometric match to J3_8CRE_080

Geometric discrepancy: 0.1635

The information below is about J3_8CRE_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_88451.1

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4CUX|1|2|C|1180
4CUX|1|2|U|1181
4CUX|1|2|U|1182
4CUX|1|2|A|1183
4CUX|1|2|A|1184
4CUX|1|2|U|1185
4CUX|1|2|U|1186
4CUX|1|2|U|1187
*
4CUX|1|2|G|1198
4CUX|1|2|G|1199
4CUX|1|2|G|1200
4CUX|1|2|G|1201
4CUX|1|2|A|1202
4CUX|1|2|A|1203
4CUX|1|2|A|1204
4CUX|1|2|C|1205
4CUX|1|2|U|1206
4CUX|1|2|C|1207
4CUX|1|2|A|1208
4CUX|1|2|C|1209
*
4CUX|1|2|G|1454
4CUX|1|2|G|1455
4CUX|1|2|C|1456
4CUX|1|2|C|1457
4CUX|1|2|G|1458

Current chains

Chain 2

18S RRNA

Nearby chains

Chain Z

Cripavirus internal ribosome entry site (IRES); CrPV IRES