J3_4CUX_017

3D structure

PDB id

4CUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CACUG*CGUGCUGG*CGAG

Length

17 nucleotides

Bulged bases

4CUX|1|2|U|1473, 4CUX|1|2|G|1539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CUX_017 not in the Motif Atlas

Geometric match to J3_8P9A_084

Geometric discrepancy: 0.3039

The information below is about J3_8P9A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

4CUX|1|2|C|1470
4CUX|1|2|A|1471
4CUX|1|2|C|1472
4CUX|1|2|U|1473
4CUX|1|2|G|1474
*
4CUX|1|2|C|1533
4CUX|1|2|G|1534
4CUX|1|2|U|1535
4CUX|1|2|G|1536
4CUX|1|2|C|1537
4CUX|1|2|U|1538
4CUX|1|2|G|1539
4CUX|1|2|G|1540
*
4CUX|1|2|C|1571
4CUX|1|2|G|1572
4CUX|1|2|A|1573
4CUX|1|2|G|1574

Current chains

Chain 2

18S RRNA

Nearby chains