J3_4CXE_006

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

4CXE|1|2|A|2373

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CXE_006 not in the Motif Atlas

Geometric match to J3_8CRE_013

Geometric discrepancy: 0.1867

The information below is about J3_8CRE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

4CXE|1|2|C|2370
4CXE|1|2|G|2371
4CXE|1|2|A|2372
4CXE|1|2|A|2373
4CXE|1|2|G|2374
4CXE|1|2|U|2375
4CXE|1|2|G|2376
*
4CXE|1|2|C|2782
4CXE|1|2|A|2783
4CXE|1|2|A|2784
*
4CXE|1|2|U|2796
4CXE|1|2|C|2797
4CXE|1|2|U|2798
4CXE|1|2|G|2799

Current chains

Chain 2

28S RRNA

Nearby chains