J3_4CXE_023

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UCGGUC*GGAGU*AA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CXE_023 not in the Motif Atlas

Geometric match to J3_8P9A_055

Geometric discrepancy: 0.169

The information below is about J3_8P9A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

10

Unit IDs

4CXE|1|2|U|2417
4CXE|1|2|C|2418
4CXE|1|2|G|2419
4CXE|1|2|G|2420
4CXE|1|2|U|2421
4CXE|1|2|C|2422
*
4CXE|1|2|G|2492
4CXE|1|2|G|2493
4CXE|1|2|A|2494
4CXE|1|2|G|2495
4CXE|1|2|U|2496
*
4CXE|1|2|A|2513
4CXE|1|2|A|2514

Current chains

Chain 2

28S RRNA

Nearby chains

Chain 3

5.8S ribosomal RNA; 5.8S rRNA