J3_4D67_007

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

4D67|1|2|G|2371, 4D67|1|2|A|2373

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4D67_007 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.1881

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

4D67|1|2|C|2370
4D67|1|2|G|2371
4D67|1|2|A|2372
4D67|1|2|A|2373
4D67|1|2|G|2374
4D67|1|2|U|2375
4D67|1|2|G|2376
*
4D67|1|2|C|2782
4D67|1|2|A|2783
4D67|1|2|A|2784
*
4D67|1|2|U|2796
4D67|1|2|C|2797
4D67|1|2|U|2798
4D67|1|2|G|2799

Current chains

Chain 2

28S RRNA

Nearby chains

Chain R

60S RIBOSOMAL PROTEIN L19

Chain g

60S RIBOSOMAL PROTEIN L34