J3_4D67_008

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

4D67|1|2|U|2765, 4D67|1|2|A|2766, 4D67|1|2|U|2767

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4D67_008 not in the Motif Atlas

Homologous match to J3_8C3A_007

Geometric discrepancy: 0.2042

The information below is about J3_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4D67|1|2|G|2379
4D67|1|2|A|2380
4D67|1|2|A|2381
4D67|1|2|G|2382
*
4D67|1|2|C|2762
4D67|1|2|C|2763
4D67|1|2|A|2764
4D67|1|2|U|2765
4D67|1|2|A|2766
4D67|1|2|U|2767
4D67|1|2|C|2768
*
4D67|1|2|G|2777
4D67|1|2|U|2778
4D67|1|2|C|2779

Current chains

Chain 2

28S RRNA

Nearby chains

Chain g

60S RIBOSOMAL PROTEIN L34

Chain j

60S RIBOSOMAL PROTEIN L37

Chain l

60S RIBOSOMAL PROTEIN L39