J3_4D67_013

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

4D67|1|2|A|4424

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4D67_013 not in the Motif Atlas

Homologous match to J3_5TBW_014

Geometric discrepancy: 0.2733

The information below is about J3_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

4D67|1|2|U|4423
4D67|1|2|A|4424
4D67|1|2|U|4425
4D67|1|2|C|4426
*
4D67|1|2|G|4451
4D67|1|2|U|4452
4D67|1|2|U|4453
*
4D67|1|2|A|4467
4D67|1|2|C|4468
4D67|1|2|U|4469
4D67|1|2|A|4470
4D67|1|2|A|4471
4D67|1|2|U|4472
4D67|1|2|A|4473

Current chains

Chain 2

28S RRNA

Nearby chains

Chain B

60S RIBOSOMAL PROTEIN L3

Chain O

60S RIBOSOMAL PROTEIN L13A

Chain V

60S RIBOSOMAL PROTEIN L23