J3_4P3E_001
3D structure
- PDB id
- 4P3E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human SRP S domain
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- UC*GCCUAAGG*CG
- Length
- 12 nucleotides
- Bulged bases
- 4P3E|1|A|C|169
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4P3E_001 not in the Motif Atlas
- Geometric match to J3_1MFQ_002
- Geometric discrepancy: 0.2819
- The information below is about J3_1MFQ_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_36023.1
- Basepair signature
- cWW-cWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
4P3E|1|A|U|128
4P3E|1|A|C|129
*
4P3E|1|A|G|168
4P3E|1|A|C|169
4P3E|1|A|C|170
4P3E|1|A|U|171
4P3E|1|A|A|172
4P3E|1|A|A|173
4P3E|1|A|G|174
4P3E|1|A|G|175
*
4P3E|1|A|C|221
4P3E|1|A|G|222
Current chains
- Chain A
- SRP RNA (124-mer)
Nearby chains
- Chain C
- Signal recognition particle subunit SRP68
Coloring options: