J3_4TUB_046

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4TUB_046 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.597

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

4TUB|1|YA|G|1055
4TUB|1|YA|G|1056
4TUB|1|YA|A|1057
*
4TUB|1|YA|U|1081
4TUB|1|YA|U|1082
4TUB|1|YA|U|1083
4TUB|1|YA|A|1084
4TUB|1|YA|A|1085
4TUB|1|YA|A|1086
4TUB|1|YA|G|1087
*
4TUB|1|YA|C|1102
4TUB|1|YA|A|1103
4TUB|1|YA|C|1104

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y9

50S ribosomal protein L36