J3_4TUB_058

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4TUB|1|QA|U|1212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4TUB_058 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1725

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4TUB|1|QA|C|990
4TUB|1|QA|U|991
4TUB|1|QA|U|992
4TUB|1|QA|G|993
4TUB|1|QA|A|994
4TUB|1|QA|C|995
4TUB|1|QA|A|996
4TUB|1|QA|U|997
*
4TUB|1|QA|A|1044
4TUB|1|QA|C|1045
4TUB|1|QA|A|1046
4TUB|1|QA|G|1047
*
4TUB|1|QA|C|1210
4TUB|1|QA|U|1211
4TUB|1|QA|U|1212
4TUB|1|QA|A|1213
4TUB|1|QA|C|1214
4TUB|1|QA|G|1215

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QN

30S ribosomal protein S14 type Z

Chain YA

Large subunit ribosomal RNA; LSU rRNA