J3_4TUB_060
3D structure
- PDB id
- 4TUB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
- Length
- 28 nucleotides
- Bulged bases
- 4TUB|1|RA|U|529, 4TUB|1|RA|G|533
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4TUB_060 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.147
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
4TUB|1|RA|G|30
4TUB|1|RA|C|31
*
4TUB|1|RA|G|500
4TUB|1|RA|U|501
4TUB|1|RA|G|502
4TUB|1|RA|A|503
4TUB|1|RA|A|504
4TUB|1|RA|A|505
4TUB|1|RA|A|506
4TUB|1|RA|G|507
4TUB|1|RA|A|508
4TUB|1|RA|A|509
4TUB|1|RA|C|510
*
4TUB|1|RA|G|521
4TUB|1|RA|A|522
4TUB|1|RA|G|523
4TUB|1|RA|U|524
4TUB|1|RA|G|525
4TUB|1|RA|A|526
4TUB|1|RA|A|527
4TUB|1|RA|A|528
4TUB|1|RA|U|529
4TUB|1|RA|A|530
4TUB|1|RA|G|531
4TUB|1|RA|A|532
4TUB|1|RA|G|533
4TUB|1|RA|C|534
4TUB|1|RA|C|535
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain RU
- 50S ribosomal protein L20
- Chain RW
- 50S ribosomal protein L22
- Chain RY
- 50S ribosomal protein L24
Coloring options: