J3_4TUB_064

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

4TUB|1|XA|C|48, 4TUB|1|XA|A|50, 4TUB|1|XA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4TUB_064 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.0873

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4TUB|1|XA|G|46
4TUB|1|XA|C|47
4TUB|1|XA|C|48
4TUB|1|XA|U|49
4TUB|1|XA|A|50
4TUB|1|XA|A|51
4TUB|1|XA|G|52
*
4TUB|1|XA|U|359
4TUB|1|XA|A|360
4TUB|1|XA|G|361
4TUB|1|XA|G|362
4TUB|1|XA|A|363
4TUB|1|XA|A|364
4TUB|1|XA|U|365
4TUB|1|XA|C|366
4TUB|1|XA|U|367
*
4TUB|1|XA|A|393
4TUB|1|XA|G|394
4TUB|1|XA|C|395

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XP

30S ribosomal protein S16