J3_4UG0_005

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

4UG0|1|L5|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4UG0_005 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.1032

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

4UG0|1|L5|C|2393
4UG0|1|L5|G|2394
4UG0|1|L5|A|2395
4UG0|1|L5|A|2396
4UG0|1|L5|G|2397
4UG0|1|L5|U|2398
4UG0|1|L5|G|2399
*
4UG0|1|L5|C|2805
4UG0|1|L5|A|2806
4UG0|1|L5|A|2807
*
4UG0|1|L5|U|2819
4UG0|1|L5|C|2820
4UG0|1|L5|U|2821
4UG0|1|L5|G|2822

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LR

60S RIBOSOMAL PROTEIN L19

Chain Lg

60S RIBOSOMAL PROTEIN L34