J3_4UG0_009
3D structure
- PDB id
- 4UG0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- STRUCTURE OF THE HUMAN 80S RIBOSOME
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGG*CUGAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4UG0_009 not in the Motif Atlas
- Geometric match to J3_7A0S_009
- Geometric discrepancy: 0.3622
- The information below is about J3_7A0S_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17460.1
- Basepair signature
- cWW-tHH-cWW-F-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4UG0|1|L5|C|3937
4UG0|1|L5|G|3938
4UG0|1|L5|G|3939
*
4UG0|1|L5|C|4074
4UG0|1|L5|U|4075
4UG0|1|L5|G|4076
4UG0|1|L5|A|4077
4UG0|1|L5|C|4078
*
4UG0|1|L5|G|4168
4UG0|1|L5|G|4169
4UG0|1|L5|A|4170
4UG0|1|L5|C|4171
4UG0|1|L5|A|4172
4UG0|1|L5|G|4173
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LA
- 60S RIBOSOMAL PROTEIN L8
- Chain LG
- 60S RIBOSOMAL PROTEIN L7A
- Chain LN
- 60S RIBOSOMAL PROTEIN L15
Coloring options: