J3_4UG0_022
3D structure
- PDB id
- 4UG0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- STRUCTURE OF THE HUMAN 80S RIBOSOME
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CACUG*CGUGAUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 4UG0|1|S2|U|1535
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4UG0_022 not in the Motif Atlas
- Geometric match to J3_4LFB_009
- Geometric discrepancy: 0.2652
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.1
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
4UG0|1|S2|C|1532
4UG0|1|S2|A|1533
4UG0|1|S2|C|1534
4UG0|1|S2|U|1535
4UG0|1|S2|G|1536
*
4UG0|1|S2|C|1597
4UG0|1|S2|G|1598
4UG0|1|S2|U|1599
4UG0|1|S2|G|1600
4UG0|1|S2|A|1601
4UG0|1|S2|U|1602
4UG0|1|S2|G|1603
4UG0|1|S2|G|1604
*
4UG0|1|S2|C|1635
4UG0|1|S2|G|1636
4UG0|1|S2|A|1637
4UG0|1|S2|G|1638
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain S6
- Transfer RNA; tRNA
- Chain SF
- 40S RIBOSOMAL PROTEIN S5
- Chain SS
- 40S RIBOSOMAL PROTEIN S18
- Chain ST
- 40S RIBOSOMAL PROTEIN S19
- Chain SZ
- 40S RIBOSOMAL PROTEIN S25
Coloring options: