J3_4UJC_005

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

4UJC|1|A2|A|1513, 4UJC|1|A2|G|1620

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4UJC_005 not in the Motif Atlas

Homologous match to J3_8C3A_003

Geometric discrepancy: 0.1652

The information below is about J3_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4UJC|1|A2|U|1510
4UJC|1|A2|G|1511
4UJC|1|A2|A|1512
4UJC|1|A2|A|1513
4UJC|1|A2|C|1514
4UJC|1|A2|U|1515
4UJC|1|A2|A|1516
*
4UJC|1|A2|U|1601
4UJC|1|A2|A|1602
4UJC|1|A2|G|1603
*
4UJC|1|A2|C|1619
4UJC|1|A2|G|1620
4UJC|1|A2|A|1621
4UJC|1|A2|A|1622

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BA

60S RIBOSOMAL PROTEIN L8

Chain BN

60S RIBOSOMAL PROTEIN L15

Chain Bj

60S RIBOSOMAL PROTEIN L37