J3_4UJC_008

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

4UJC|1|A2|U|2765, 4UJC|1|A2|A|2766, 4UJC|1|A2|U|2767

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4UJC_008 not in the Motif Atlas

Homologous match to J3_8C3A_007

Geometric discrepancy: 0.2042

The information below is about J3_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4UJC|1|A2|G|2379
4UJC|1|A2|A|2380
4UJC|1|A2|A|2381
4UJC|1|A2|G|2382
*
4UJC|1|A2|C|2762
4UJC|1|A2|C|2763
4UJC|1|A2|A|2764
4UJC|1|A2|U|2765
4UJC|1|A2|A|2766
4UJC|1|A2|U|2767
4UJC|1|A2|C|2768
*
4UJC|1|A2|G|2777
4UJC|1|A2|U|2778
4UJC|1|A2|C|2779

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain Bg

60S RIBOSOMAL PROTEIN L34

Chain Bj

60S RIBOSOMAL PROTEIN L37

Chain Bl

60S RIBOSOMAL PROTEIN L39