J3_4UJC_013
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 4UJC|1|A2|A|4424
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4UJC_013 not in the Motif Atlas
- Homologous match to J3_5TBW_014
- Geometric discrepancy: 0.2734
- The information below is about J3_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
4UJC|1|A2|U|4423
4UJC|1|A2|A|4424
4UJC|1|A2|U|4425
4UJC|1|A2|C|4426
*
4UJC|1|A2|G|4451
4UJC|1|A2|U|4452
4UJC|1|A2|U|4453
*
4UJC|1|A2|A|4467
4UJC|1|A2|C|4468
4UJC|1|A2|U|4469
4UJC|1|A2|A|4470
4UJC|1|A2|A|4471
4UJC|1|A2|U|4472
4UJC|1|A2|A|4473
Current chains
- Chain A2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain AB
- EIF5B
- Chain BB
- 60S RIBOSOMAL PROTEIN L3
- Chain BO
- 60S RIBOSOMAL PROTEIN L13A
- Chain BV
- 60S RIBOSOMAL PROTEIN L23
Coloring options: