J3_4UJC_020
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- AGAG*CAG*CUGGAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4UJC_020 not in the Motif Atlas
- Geometric match to J3_4V88_032
- Geometric discrepancy: 0.1894
- The information below is about J3_4V88_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_54972.1
- Basepair signature
- cWW-tWW-F-cWW-F-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
4UJC|1|C1|A|816
4UJC|1|C1|G|817
4UJC|1|C1|A|818
4UJC|1|C1|G|819
*
4UJC|1|C1|C|829
4UJC|1|C1|A|830
4UJC|1|C1|G|831
*
4UJC|1|C1|C|843
4UJC|1|C1|U|844
4UJC|1|C1|G|845
4UJC|1|C1|G|846
4UJC|1|C1|A|847
4UJC|1|C1|U|848
Current chains
- Chain C1
- 18S RIBOSOMAL RNA
Nearby chains
- Chain CE
- 40S RIBOSOMAL PROTEIN ES4
- Chain CJ
- 40S RIBOSOMAL PROTEIN US4
- Chain CY
- 40S RIBOSOMAL PROTEIN ES24
Coloring options: