J3_4UJC_025
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- CCGGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 4UJC|1|C1|G|1274, 4UJC|1|C1|A|1276, 4UJC|1|C1|A|1506, 4UJC|1|C1|G|1507, 4UJC|1|C1|U|1509
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4UJC_025 not in the Motif Atlas
- Homologous match to J3_8C3A_041
- Geometric discrepancy: 0.5412
- The information below is about J3_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23728.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
4UJC|1|C1|C|1272
4UJC|1|C1|C|1273
4UJC|1|C1|G|1274
4UJC|1|C1|G|1275
4UJC|1|C1|A|1276
4UJC|1|C1|C|1277
*
4UJC|1|C1|G|1320
4UJC|1|C1|G|1321
4UJC|1|C1|G|1322
4UJC|1|C1|U|1323
4UJC|1|C1|G|1324
*
4UJC|1|C1|U|1504
4UJC|1|C1|U|1505
4UJC|1|C1|A|1506
4UJC|1|C1|G|1507
4UJC|1|C1|A|1508
4UJC|1|C1|U|1509
4UJC|1|C1|G|1510
Current chains
- Chain C1
- 18S RIBOSOMAL RNA
Nearby chains
- Chain CK
- 40S RIBOSOMAL PROTEIN ES10
- Chain CM
- 40S RIBOSOMAL PROTEIN ES12
- Chain Cd
- 40S RIBOSOMAL PROTEIN US14
- Chain Cf
- 40S RIBOSOMAL PROTEIN ES31
Coloring options: