J3_4UJD_005
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 4UJD|1|A2|A|1513, 4UJD|1|A2|G|1620
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4UJD_005 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.1652
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
4UJD|1|A2|U|1510
4UJD|1|A2|G|1511
4UJD|1|A2|A|1512
4UJD|1|A2|A|1513
4UJD|1|A2|C|1514
4UJD|1|A2|U|1515
4UJD|1|A2|A|1516
*
4UJD|1|A2|U|1601
4UJD|1|A2|A|1602
4UJD|1|A2|G|1603
*
4UJD|1|A2|C|1619
4UJD|1|A2|G|1620
4UJD|1|A2|A|1621
4UJD|1|A2|A|1622
Current chains
- Chain A2
- 28S Ribosomal RNA
Nearby chains
- Chain AA
- 60S RIBOSOMAL PROTEIN L8
- Chain AN
- 60S RIBOSOMAL PROTEIN L15
- Chain Aj
- 60S RIBOSOMAL PROTEIN L37
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