J3_4UJD_007

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

4UJD|1|A2|G|2371, 4UJD|1|A2|A|2373

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4UJD_007 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.1881

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

4UJD|1|A2|C|2370
4UJD|1|A2|G|2371
4UJD|1|A2|A|2372
4UJD|1|A2|A|2373
4UJD|1|A2|G|2374
4UJD|1|A2|U|2375
4UJD|1|A2|G|2376
*
4UJD|1|A2|C|2782
4UJD|1|A2|A|2783
4UJD|1|A2|A|2784
*
4UJD|1|A2|U|2796
4UJD|1|A2|C|2797
4UJD|1|A2|U|2798
4UJD|1|A2|G|2799

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AR

60S RIBOSOMAL PROTEIN L19

Chain Ag

60S RIBOSOMAL PROTEIN L34