J3_4UJD_008
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- GAAG*CCAUAUC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 4UJD|1|A2|U|2765, 4UJD|1|A2|A|2766, 4UJD|1|A2|U|2767
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4UJD_008 not in the Motif Atlas
- Homologous match to J3_8C3A_007
- Geometric discrepancy: 0.2042
- The information below is about J3_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
4UJD|1|A2|G|2379
4UJD|1|A2|A|2380
4UJD|1|A2|A|2381
4UJD|1|A2|G|2382
*
4UJD|1|A2|C|2762
4UJD|1|A2|C|2763
4UJD|1|A2|A|2764
4UJD|1|A2|U|2765
4UJD|1|A2|A|2766
4UJD|1|A2|U|2767
4UJD|1|A2|C|2768
*
4UJD|1|A2|G|2777
4UJD|1|A2|U|2778
4UJD|1|A2|C|2779
Current chains
- Chain A2
- 28S Ribosomal RNA
Nearby chains
- Chain Ag
- 60S RIBOSOMAL PROTEIN L34
- Chain Aj
- 60S RIBOSOMAL PROTEIN L37
- Chain Al
- 60S RIBOSOMAL PROTEIN L39
Coloring options: