J3_4UJD_013

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

4UJD|1|A2|A|4424

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4UJD_013 not in the Motif Atlas

Homologous match to J3_5TBW_014

Geometric discrepancy: 0.2733

The information below is about J3_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

4UJD|1|A2|U|4423
4UJD|1|A2|A|4424
4UJD|1|A2|U|4425
4UJD|1|A2|C|4426
*
4UJD|1|A2|G|4451
4UJD|1|A2|U|4452
4UJD|1|A2|U|4453
*
4UJD|1|A2|A|4467
4UJD|1|A2|C|4468
4UJD|1|A2|U|4469
4UJD|1|A2|A|4470
4UJD|1|A2|A|4471
4UJD|1|A2|U|4472
4UJD|1|A2|A|4473

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AB

60S RIBOSOMAL PROTEIN L3

Chain AO

60S RIBOSOMAL PROTEIN L13A

Chain AV

60S RIBOSOMAL PROTEIN L23