J3_4UJD_014

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CAU*GCUUCUG*CAAG

Length

14 nucleotides

Bulged bases

4UJD|1|A2|U|4946

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4UJD_014 not in the Motif Atlas

Geometric match to J3_5TBW_069

Geometric discrepancy: 0.1725

The information below is about J3_5TBW_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_42762.1

Basepair signature

cWW-cWW-F-cWW-F-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

4UJD|1|A2|C|4925
4UJD|1|A2|A|4926
4UJD|1|A2|U|4927
*
4UJD|1|A2|G|4941
4UJD|1|A2|C|4942
4UJD|1|A2|U|4943
4UJD|1|A2|U|4944
4UJD|1|A2|C|4945
4UJD|1|A2|U|4946
4UJD|1|A2|G|4947
*
4UJD|1|A2|C|5014
4UJD|1|A2|A|5015
4UJD|1|A2|A|5016
4UJD|1|A2|G|5017

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AB

60S RIBOSOMAL PROTEIN L3

Chain AP

60S RIBOSOMAL PROTEIN L17

Chain Ad

60S RIBOSOMAL PROTEIN L31