J3_4UJD_015
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- AC*GAGAAUU*ACACU
- Length
- 14 nucleotides
- Bulged bases
- 4UJD|1|A3|A|62
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4UJD_015 not in the Motif Atlas
- Homologous match to J3_8P4V_024
- Geometric discrepancy: 0.1348
- The information below is about J3_8P4V_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
4UJD|1|A3|A|44
4UJD|1|A3|C|45
*
4UJD|1|A3|G|58
4UJD|1|A3|A|59
4UJD|1|A3|G|60
4UJD|1|A3|A|61
4UJD|1|A3|A|62
4UJD|1|A3|U|63
4UJD|1|A3|U|64
*
4UJD|1|A3|A|95
4UJD|1|A3|C|96
4UJD|1|A3|A|97
4UJD|1|A3|C|98
4UJD|1|A3|U|99
Current chains
- Chain A3
- 5.8S Ribosomal RNA
Nearby chains
- Chain AX
- 60S RIBOSOMAL PROTEIN L23A
- Chain Ah
- 60S RIBOSOMAL PROTEIN L35
- Chain Aj
- 60S RIBOSOMAL PROTEIN L37
- Chain Al
- 60S RIBOSOMAL PROTEIN L39
Coloring options: