J3_4UJD_040

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GAGAAG*CC*GAAAAUC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4UJD_040 not in the Motif Atlas

Geometric match to J3_5J7L_069

Geometric discrepancy: 0.3318

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4UJD|1|A2|G|2574
4UJD|1|A2|A|2575
4UJD|1|A2|G|2576
4UJD|1|A2|A|2577
4UJD|1|A2|A|2578
4UJD|1|A2|G|2579
*
4UJD|1|A2|C|2714
4UJD|1|A2|C|2715
*
4UJD|1|A2|G|2719
4UJD|1|A2|A|2720
4UJD|1|A2|A|2721
4UJD|1|A2|A|2722
4UJD|1|A2|A|2723
4UJD|1|A2|U|2724
4UJD|1|A2|C|2725

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AA

60S RIBOSOMAL PROTEIN L8

Chain Ag

60S RIBOSOMAL PROTEIN L34

Chain Ap

60S RIBOSOMAL PROTEIN L37A