J3_4UJE_005

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

4UJE|1|A2|A|1513, 4UJE|1|A2|G|1620

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4UJE_005 not in the Motif Atlas

Homologous match to J3_8C3A_003

Geometric discrepancy: 0.1652

The information below is about J3_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4UJE|1|A2|U|1510
4UJE|1|A2|G|1511
4UJE|1|A2|A|1512
4UJE|1|A2|A|1513
4UJE|1|A2|C|1514
4UJE|1|A2|U|1515
4UJE|1|A2|A|1516
*
4UJE|1|A2|U|1601
4UJE|1|A2|A|1602
4UJE|1|A2|G|1603
*
4UJE|1|A2|C|1619
4UJE|1|A2|G|1620
4UJE|1|A2|A|1621
4UJE|1|A2|A|1622

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CA

60S RIBOSOMAL PROTEIN L8

Chain CN

60S RIBOSOMAL PROTEIN L15

Chain Cj

60S RIBOSOMAL PROTEIN L37