J3_4UJE_008

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

4UJE|1|A2|U|2765, 4UJE|1|A2|A|2766, 4UJE|1|A2|U|2767

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4UJE_008 not in the Motif Atlas

Homologous match to J3_8C3A_007

Geometric discrepancy: 0.2042

The information below is about J3_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4UJE|1|A2|G|2379
4UJE|1|A2|A|2380
4UJE|1|A2|A|2381
4UJE|1|A2|G|2382
*
4UJE|1|A2|C|2762
4UJE|1|A2|C|2763
4UJE|1|A2|A|2764
4UJE|1|A2|U|2765
4UJE|1|A2|A|2766
4UJE|1|A2|U|2767
4UJE|1|A2|C|2768
*
4UJE|1|A2|G|2777
4UJE|1|A2|U|2778
4UJE|1|A2|C|2779

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain Cg

60S RIBOSOMAL PROTEIN L34

Chain Cj

60S RIBOSOMAL PROTEIN L37

Chain Cl

60S RIBOSOMAL PROTEIN L39