J3_4UJE_013

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

4UJE|1|A2|A|4424

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4UJE_013 not in the Motif Atlas

Homologous match to J3_8C3A_011

Geometric discrepancy: 0.2836

The information below is about J3_8C3A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

4UJE|1|A2|U|4423
4UJE|1|A2|A|4424
4UJE|1|A2|U|4425
4UJE|1|A2|C|4426
*
4UJE|1|A2|G|4451
4UJE|1|A2|U|4452
4UJE|1|A2|U|4453
*
4UJE|1|A2|A|4467
4UJE|1|A2|C|4468
4UJE|1|A2|U|4469
4UJE|1|A2|A|4470
4UJE|1|A2|A|4471
4UJE|1|A2|U|4472
4UJE|1|A2|A|4473

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CB

60S RIBOSOMAL PROTEIN L3

Chain CO

60S RIBOSOMAL PROTEIN L13A

Chain CV

60S RIBOSOMAL PROTEIN L23