J3_4UJE_024
3D structure
- PDB id
- 4UJE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.9 Å
Loop
- Sequence
- CCGGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 4UJE|1|B1|G|1274, 4UJE|1|B1|A|1276, 4UJE|1|B1|A|1506, 4UJE|1|B1|G|1507, 4UJE|1|B1|U|1509
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4UJE_024 not in the Motif Atlas
- Homologous match to J3_8C3A_041
- Geometric discrepancy: 0.5412
- The information below is about J3_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23728.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
4UJE|1|B1|C|1272
4UJE|1|B1|C|1273
4UJE|1|B1|G|1274
4UJE|1|B1|G|1275
4UJE|1|B1|A|1276
4UJE|1|B1|C|1277
*
4UJE|1|B1|G|1320
4UJE|1|B1|G|1321
4UJE|1|B1|G|1322
4UJE|1|B1|U|1323
4UJE|1|B1|G|1324
*
4UJE|1|B1|U|1504
4UJE|1|B1|U|1505
4UJE|1|B1|A|1506
4UJE|1|B1|G|1507
4UJE|1|B1|A|1508
4UJE|1|B1|U|1509
4UJE|1|B1|G|1510
Current chains
- Chain B1
- 18S Ribosomal RNA
Nearby chains
- Chain BK
- 40S RIBOSOMAL PROTEIN S10
- Chain BM
- 40S RIBOSOMAL PROTEIN S12
- Chain Bd
- 40S RIBOSOMAL PROTEIN S29
- Chain Bf
- UBIQUITIN-40S RIBOSOMAL PROTEIN S27A
Coloring options: