J3_4UY8_004

3D structure

PDB id

4UY8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4UY8_004 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0895

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4UY8|1|A|C|1298
4UY8|1|A|G|1299
4UY8|1|A|G|1300
4UY8|1|A|A|1301
4UY8|1|A|A|1302
4UY8|1|A|G|1303
*
4UY8|1|A|C|1625
4UY8|1|A|A|1626
4UY8|1|A|G|1627
*
4UY8|1|A|C|1639
4UY8|1|A|A|1640
4UY8|1|A|A|1641
4UY8|1|A|G|1642

Current chains

Chain A

RRNA-23S RIBOSOMAL RNA

Nearby chains