3D structure

PDB id
4UY8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CAAG*CCCAAAC*GUG
Length
14 nucleotides
Bulged bases
4UY8|1|A|A|1609
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4UY8_005 not in the Motif Atlas
Homologous match to J3_7A0S_007
Geometric discrepancy: 0.1442
The information below is about J3_7A0S_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_71677.1
Basepair signature
cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

4UY8|1|A|C|1306
4UY8|1|A|A|1307
4UY8|1|A|A|1308
4UY8|1|A|G|1309
*
4UY8|1|A|C|1605
4UY8|1|A|C|1606
4UY8|1|A|C|1607
4UY8|1|A|A|1608
4UY8|1|A|A|1609
4UY8|1|A|A|1610
4UY8|1|A|C|1611
*
4UY8|1|A|G|1620
4UY8|1|A|U|1621
4UY8|1|A|G|1622

Current chains

Chain A
RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain 2
50S RIBOSOMAL PROTEIN L34

Coloring options:


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