J3_4UY8_018

3D structure

PDB id

4UY8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4UY8_018 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.1268

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

4UY8|1|A|G|1055
4UY8|1|A|G|1056
4UY8|1|A|A|1057
*
4UY8|1|A|U|1081
4UY8|1|A|U|1082
4UY8|1|A|U|1083
4UY8|1|A|A|1084
4UY8|1|A|A|1085
4UY8|1|A|A|1086
4UY8|1|A|G|1087
*
4UY8|1|A|C|1102
4UY8|1|A|A|1103
4UY8|1|A|C|1104

Current chains

Chain A

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain 4

50S RIBOSOMAL PROTEIN L36

Chain 5

50S RIBOSOMAL PROTEIN L10

Chain I

50S RIBOSOMAL PROTEIN L11