J3_4V49_019

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

4V49|1|B0|A|1625

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V49_019 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.391

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

4V49|1|B0|C|1319
4V49|1|B0|A|1320
4V49|1|B0|A|1321
4V49|1|B0|G|1322
*
4V49|1|B0|C|1621
4V49|1|B0|G|1622
4V49|1|B0|C|1623
4V49|1|B0|A|1624
4V49|1|B0|A|1625
4V49|1|B0|A|1626
4V49|1|B0|C|1627
*
4V49|1|B0|G|1636
4V49|1|B0|U|1637
4V49|1|B0|G|1638

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain B2

50S ribosomal protein L34